Humans are able to effortlessly group the world in terms of abstract and reusable'building blocks',

Deep temporal architectures such as TCNs achieve strong predictive performance on sequential data, yet theoretical understanding of their generalization remains limited. We address this gap through three contributions: introducing an evaluation methodology for temporal models, revealing surprising empirical phenomena about temporal dependence, and the first architecture-aware theoretical framework for dependent sequences. Fair-Comparison Methodology. We introduce evaluation protocols that fix effective sample size $N_{\text{eff}}$ to isolate temporal structure effects from information content. Empirical Findings. Applying this method reveals that under $N_{\text{eff}} = 2000$, strongly dependent sequences ($ρ= 0.8$) exhibit approx' $76\%$ smaller generalization gaps than weakly dependent ones ($ρ= 0.2$), challenging the conventional view that dependence universally impedes learning. However, observed convergence rates ($N_{\text{eff}}^{-1.21}$ to $N_{\text{eff}}^{-0.89}$) significantly exceed theoretical worst-case predictions ($N^{-0.5}$), revealing that temporal architectures exploit problem structure in ways current theory does not capture. Lastly, we develop the first architecture-aware generalization bounds for deep temporal models on exponentially $β$-mixing sequences. By embedding Golowich et al.'s i.i.d. class bound within a novel blocking scheme that partitions $N$ samples into approx' $B \approx N/\log N$ quasi-independent blocks, we establish polynomial sample complexity under convex Lipschitz losses. The framework achieves $\sqrt{D}$ depth scaling alongside the product of layer-wise norms $R = \prod_{\ell=1}^{D} M^{(\ell)}$, avoiding exponential dependence. While these bounds are conservative, they prove learnability and identify architectural scaling laws, providing worst-case baselines that highlight where future theory must improve.

Recovering meaningful concepts from language model activations is a central aim of interpretability. While existing feature extraction methods aim to identify concepts that are independent directions, it is unclear if this assumption can capture the rich temporal structure of language. Specifically, via a Bayesian lens, we demonstrate that Sparse Autoencoders (SAEs) impose priors that assume independence of concepts across time, implying stationarity. Meanwhile, language model representations exhibit rich temporal dynamics, including systematic growth in conceptual dimensionality, context-dependent correlations, and pronounced non-stationarity, in direct conflict with the priors of SAEs. Taking inspiration from computational neuroscience, we introduce a new interpretability objective -- Temporal Feature Analysis -- which possesses a temporal inductive bias to decompose representations at a given time into two parts: a predictable component, which can be inferred from the context, and a residual component, which captures novel information unexplained by the context. Temporal Feature Analyzers correctly parse garden path sentences, identify event boundaries, and more broadly delineate abstract, slow-moving information from novel, fast-moving information, while existing SAEs show significant pitfalls in all the above tasks. Overall, our results underscore the need for inductive biases that match the data in designing robust interpretability tools.

The spikes highlighted in red are part of a repeating motif.

Nonlinear independent component analysis (ICA) provides an appealing framework for unsupervised feature learning, but the models proposed so far are not identifiable.

In this work, we investigate the approximation rate results for the Transformer architectures on general sequence to sequence target relationships.

Single-cell RNA sequencing (scRNA-seq), especially temporally resolved datasets, enables genome-wide profiling of gene expression dynamics at single-cell resolution across discrete time points. However, current technologies provide only sparse, static snapshots of cell states and are inherently influenced by technical noise, complicating the inference and representation of continuous transcriptional dynamics. Although embedding methods can reduce dimensionality and mitigate technical noise, the majority of existing approaches typically treat trajectory inference separately from embedding construction, often neglecting temporal structure. To address this challenge, here we introduce CellStream, a novel deep learning framework that jointly learns embedding and cellular dynamics from single-cell snapshots data by integrating an autoencoder with unbalanced dynamical optimal transport. Compared to existing methods, CellStream generates dynamics-informed embeddings that robustly capture temporal developmental processes while maintaining high consistency with the underlying data manifold. We demonstrate CellStream's effectiveness on both simulated datasets and real scRNA-seq data, including spatial transcriptomics. Our experiments indicate significant quantitative improvements over state-of-the-art methods in representing cellular trajectories with enhanced temporal coherence and reduced noise sensitivity. Overall, CellStream provides a new tool for learning and representing continuous streams from the noisy, static snapshots of single-cell gene expression.

We introduce a variational approach to learning and inference of temporally hierarchical structure and representation for sequential data.